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SFTPC surfactant protein C [ Panthera tigris (tiger) ]

Gene ID: 102972615, updated on 16-Jun-2024

Summary

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Gene symbol
SFTPC
Gene description
surfactant protein C
See related
Ensembl:ENSPTIG00000000868
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Also known as
SP-C
Orthologs
human mouse all
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Genomic context

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See SFTPC in Genome Data Viewer
Location:
chromosome: B1
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) B1 NC_056663.1 (35660448..35663151, complement)

Chromosome B1 - NC_056663.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122237885 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein Neighboring gene bone morphogenetic protein 1 Neighboring gene leucine rich repeat LGI family member 3 Neighboring gene receptor accessory protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056663.1 Chromosome B1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in respiratory gaseous exchange by respiratory system IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in alveolar lamellar body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
surfactant protein C; pulmonary surfactant-associated protein C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290610.1 → NP_001277539.1  surfactant protein C

    See identical proteins and their annotated locations for NP_001277539.1

    Status: PROVISIONAL

    Source sequence(s)
    KF051841
    UniProtKB/TrEMBL
    T1W420, T1W4U2
    Related
    ENSPTIP00000000399.1, ENSPTIT00000001105.1
    Conserved Domains (3) summary
    smart00019
    Location:10 → 199
    SF_P; Pulmonary surfactant proteins
    smart01039
    Location:103 → 199
    BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer
    pfam08999
    Location:10 → 102
    SP_C-Propep; Surfactant protein C, N terminal propeptide

RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056663.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    35660448..35663151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015542768.2 → XP_015398254.2  pulmonary surfactant-associated protein C isoform X1

    UniProtKB/TrEMBL
    A0A060KPZ1
    Conserved Domains (1) summary
    smart00019
    Location:10 → 227
    SF_P; Pulmonary surfactant proteins
Nucleotide Protein
Heading Accession and Version

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