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INPP5F inositol polyphosphate-5-phosphatase F [ Panthera tigris (tiger) ]

Gene ID: 102972572, updated on 10-Mar-2024

Summary

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Gene symbol
INPP5F
Gene description
inositol polyphosphate-5-phosphatase F
See related
Ensembl:ENSPTIG00000011407
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See INPP5F in Genome Data Viewer
Location:
chromosome: D2
Exon count:
21
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) D2 NC_056670.1 (75105173..75194376)

Chromosome D2 - NC_056670.1Genomic Context describing neighboring genes Neighboring gene TIA1 cytotoxic granule associated RNA binding protein like 1 Neighboring gene BAG cochaperone 3 Neighboring gene minichromosome maintenance complex binding protein Neighboring gene SEC23 interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056670.1 Chromosome D2 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-4-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositide phosphatase SAC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056670.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    75105173..75194376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042959772.1 → XP_042815706.1  phosphatidylinositide phosphatase SAC2 isoform X2

    Conserved Domains (1) summary
    pfam02383
    Location:50 → 223
    Syja_N; SacI homology domain

  2. XM_042959771.1 → XP_042815705.1  phosphatidylinositide phosphatase SAC2 isoform X1

    UniProtKB/TrEMBL
    A0A8C9JRL6
    Conserved Domains (1) summary
    COG5329
    Location:50 → 567
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]

RNA

  1. XR_006208926.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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