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CNTN5 contactin 5 [ Panthera tigris (tiger) ]

Gene ID: 102971523, updated on 10-Mar-2024

Summary

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Gene symbol
CNTN5
Gene description
contactin 5
See related
Ensembl:ENSPTIG00000018861
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See CNTN5 in Genome Data Viewer
Location:
chromosome: D1
Exon count:
23
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) D1 NC_056669.1 (33259323..33793775, complement)

Chromosome D1 - NC_056669.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 42 Neighboring gene uncharacterized LOC122231082 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC122231119 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056669.1 Chromosome D1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056669.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    33259323..33793775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042959596.1 → XP_042815530.1  contactin-5

    Conserved Domains (5) summary
    smart00408
    Location:120 → 181
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:206 → 279
    IG_like; Immunoglobulin like
    cd00063
    Location:672 → 769
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:408 → 412
    Ig; Ig strand B [structural motif]
    cl11960
    Location:393 → 476
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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