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CHPF2 chondroitin polymerizing factor 2 [ Panthera tigris (tiger) ]

Gene ID: 102969582, updated on 10-Mar-2024

Summary

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Gene symbol
CHPF2
Gene description
chondroitin polymerizing factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See CHPF2 in Genome Data Viewer
Location:
chromosome: A2
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) A2 NC_056661.1 (161823657..161829249)

Chromosome A2 - NC_056661.1Genomic Context describing neighboring genes Neighboring gene histone H2B type 2-E1 Neighboring gene ATP-binding cassette sub-family F member 2 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3 Neighboring gene uncharacterized LOC102958946

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056661.1 Chromosome A2 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056661.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    161823657..161829249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042975565.1 → XP_042831499.1  chondroitin sulfate glucuronyltransferase isoform X1

    Conserved Domains (1) summary
    cl21608
    Location:177 → 269
    Galactosyl_T; Galactosyltransferase

  2. XM_042975572.1 → XP_042831506.1  chondroitin sulfate glucuronyltransferase isoform X2

    Conserved Domains (1) summary
    cl21608
    Location:177 → 269
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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