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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference P.tigris_Pti1_mat1.1 Primary Assembly
Genomic
-
NC_056660.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly
- Range
-
145974967..146096193
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_042989570.1 → XP_042845504.1 versican core protein isoform X2
- Conserved Domains (7) summary
-
- cd00033
Location:3299 → 3355
- CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
- cd03588
Location:3172 → 3295
- CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
- smart00406
Location:40 → 133
- IGv; Immunoglobulin V-Type
- cd00054
Location:3130 → 3166
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd03517
Location:151 → 245
- Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
- cd03520
Location:252 → 347
- Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
- cd00096
Location:50 → 54
- Ig; Ig strand B [structural motif]
-
XM_007079778.3 → XP_007079840.2 versican core protein isoform X1
- Conserved Domains (7) summary
-
- cd00033
Location:3299 → 3355
- CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
- cd03588
Location:3172 → 3295
- CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
- smart00406
Location:40 → 133
- IGv; Immunoglobulin V-Type
- cd00054
Location:3130 → 3166
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd03517
Location:151 → 245
- Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
- cd03520
Location:252 → 347
- Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
- cd00096
Location:50 → 54
- Ig; Ig strand B [structural motif]
-
XM_015536519.2 → XP_015392005.2 versican core protein isoform X3
- Conserved Domains (7) summary
-
- cd00033
Location:2299 → 2355
- CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
- cd03588
Location:2172 → 2295
- CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
- smart00406
Location:40 → 133
- IGv; Immunoglobulin V-Type
- cd00054
Location:2130 → 2166
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd03517
Location:151 → 245
- Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
- cd03520
Location:252 → 347
- Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
- cd00096
Location:50 → 54
- Ig; Ig strand B [structural motif]