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GNPDA1 glucosamine-6-phosphate deaminase 1 [ Panthera tigris (tiger) ]

Gene ID: 102966241, updated on 10-Mar-2024

Summary

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Gene symbol
GNPDA1
Gene description
glucosamine-6-phosphate deaminase 1
See related
Ensembl:ENSPTIG00000019610
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See GNPDA1 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
8
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) A1 NC_056660.1 (117258123..117269777, complement)

Chromosome A1 - NC_056660.1Genomic Context describing neighboring genes Neighboring gene protocadherin 12 Neighboring gene ring finger protein 14 Neighboring gene uncharacterized LOC122238606 Neighboring gene cytochrome c oxidase subunit 5A, mitochondrial-like Neighboring gene uncharacterized LOC122238607 Neighboring gene Nedd4 family interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056660.1 Chromosome A1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056660.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    117258123..117269777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042986141.1 → XP_042842075.1  glucosamine-6-phosphate isomerase 1

    UniProtKB/TrEMBL
    A0A8C9KJN8
    Conserved Domains (1) summary
    cl00339
    Location:1 → 253
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

  2. XM_007077936.3 → XP_007077998.1  glucosamine-6-phosphate isomerase 1

    See identical proteins and their annotated locations for XP_007077998.1

    UniProtKB/TrEMBL
    A0A8C9KJN8
    Conserved Domains (1) summary
    cl00339
    Location:1 → 253
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

  3. XM_007077935.3 → XP_007077997.1  glucosamine-6-phosphate isomerase 1

    See identical proteins and their annotated locations for XP_007077997.1

    UniProtKB/TrEMBL
    A0A8C9KJN8
    Related
    ENSPTIP00000022983.1
    Conserved Domains (1) summary
    cl00339
    Location:1 → 253
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...
Nucleotide Protein
Heading Accession and Version

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