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HS2ST1 heparan sulfate 2-O-sulfotransferase 1 [ Panthera tigris (tiger) ]

Gene ID: 102962516, updated on 10-Mar-2024

Summary

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Gene symbol
HS2ST1
Gene description
heparan sulfate 2-O-sulfotransferase 1
See related
Ensembl:ENSPTIG00000010901
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See HS2ST1 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
11
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) C1 NC_056667.1 (72740690..72908964)

Chromosome C1 - NC_056667.1Genomic Context describing neighboring genes Neighboring gene SH3 domain containing GRB2 like, endophilin B1 Neighboring gene selenoprotein F Neighboring gene histone H2A.Z-like Neighboring gene uncharacterized LOC122241226 Neighboring gene LIM domain only 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056667.1 Chromosome C1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056667.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    72740690..72908964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042997755.1 → XP_042853689.1  heparan sulfate 2-O-sulfotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9JNA0

  2. XM_007079160.2 → XP_007079222.2  heparan sulfate 2-O-sulfotransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C9JNA0
    Conserved Domains (1) summary
    pfam03567
    Location:71 → 327
    Sulfotransfer_2; Sulfotransferase family

  3. XM_007079161.2 → XP_007079223.2  heparan sulfate 2-O-sulfotransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C9JNA0
    Conserved Domains (1) summary
    pfam03567
    Location:71 → 326
    Sulfotransfer_2; Sulfotransferase family

  4. XM_042997757.1 → XP_042853691.1  heparan sulfate 2-O-sulfotransferase 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C9JNA0
    Conserved Domains (1) summary
    pfam03567
    Location:13 → 269
    Sulfotransfer_2; Sulfotransferase family

  5. XM_042997756.1 → XP_042853690.1  heparan sulfate 2-O-sulfotransferase 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C9JNA0

  6. XM_042997758.1 → XP_042853692.1  heparan sulfate 2-O-sulfotransferase 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C9JNA0
    Conserved Domains (1) summary
    pfam03567
    Location:13 → 269
    Sulfotransfer_2; Sulfotransferase family

  7. XM_042997759.1 → XP_042853693.1  heparan sulfate 2-O-sulfotransferase 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C9JNA0
    Conserved Domains (1) summary
    pfam03567
    Location:13 → 269
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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