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CHST10 carbohydrate sulfotransferase 10 [ Panthera tigris (tiger) ]

Gene ID: 102962128, updated on 10-Mar-2024

Summary

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Gene symbol
CHST10
Gene description
carbohydrate sulfotransferase 10
See related
Ensembl:ENSPTIG00000017989
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See CHST10 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
11
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) A3 NC_056662.1 (59073868..59104049)

Chromosome A3 - NC_056662.1Genomic Context describing neighboring genes Neighboring gene phosducin like 3 Neighboring gene neuromedin S Neighboring gene LON peptidase N-terminal domain and ring finger 2 Neighboring gene ALF transcription elongation factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056662.1 Chromosome A3 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056662.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    59073868..59104049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042981176.1 → XP_042837110.1  carbohydrate sulfotransferase 10 isoform X1

    UniProtKB/TrEMBL
    A0A8C9KDI7
    Conserved Domains (1) summary
    pfam03567
    Location:141 → 373
    Sulfotransfer_2; Sulfotransferase family

  2. XM_042981175.1 → XP_042837109.1  carbohydrate sulfotransferase 10 isoform X1

    UniProtKB/TrEMBL
    A0A8C9KDI7
    Conserved Domains (1) summary
    pfam03567
    Location:141 → 373
    Sulfotransfer_2; Sulfotransferase family

  3. XM_042981177.1 → XP_042837111.1  carbohydrate sulfotransferase 10 isoform X1

    UniProtKB/TrEMBL
    A0A8C9KDI7
    Conserved Domains (1) summary
    pfam03567
    Location:141 → 373
    Sulfotransfer_2; Sulfotransferase family

  4. XM_007097791.2 → XP_007097853.1  carbohydrate sulfotransferase 10 isoform X2

    UniProtKB/TrEMBL
    A0A8C9KDI7
    Conserved Domains (1) summary
    pfam03567
    Location:66 → 298
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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