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SPHK2 sphingosine kinase 2 [ Panthera tigris (tiger) ]

Gene ID: 102961449, updated on 10-Mar-2024

Summary

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Gene symbol
SPHK2
Gene description
sphingosine kinase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See SPHK2 in Genome Data Viewer
Location:
chromosome: E2
Exon count:
10
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) E2 NC_056674.1 (9183588..9192303, complement)

Chromosome E2 - NC_056674.1Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 11 Neighboring gene D-box binding PAR bZIP transcription factor Neighboring gene ribosomal protein L18 Neighboring gene family with sequence similarity 83 member E Neighboring gene sperm acrosome associated 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056674.1 Chromosome E2 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphinganine-1-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056674.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    9183588..9192303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042968497.1 → XP_042824431.1  sphingosine kinase 2 isoform X2

    Conserved Domains (1) summary
    PLN02958
    Location:189 → 383
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  2. XM_042968498.1 → XP_042824432.1  sphingosine kinase 2 isoform X2

    Conserved Domains (1) summary
    PLN02958
    Location:189 → 383
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  3. XM_042968502.1 → XP_042824436.1  sphingosine kinase 2 isoform X5

    Conserved Domains (1) summary
    PLN02958
    Location:1 → 175
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  4. XM_042968496.1 → XP_042824430.1  sphingosine kinase 2 isoform X2

    Conserved Domains (1) summary
    PLN02958
    Location:189 → 383
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  5. XM_042968495.1 → XP_042824429.1  sphingosine kinase 2 isoform X1

    Conserved Domains (1) summary
    PLN02958
    Location:209 → 403
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  6. XM_042968500.1 → XP_042824434.1  sphingosine kinase 2 isoform X4

    Conserved Domains (1) summary
    PLN02958
    Location:153 → 347
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  7. XM_042968501.1 → XP_042824435.1  sphingosine kinase 2 isoform X4

    Conserved Domains (1) summary
    PLN02958
    Location:153 → 347
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  8. XM_042968499.1 → XP_042824433.1  sphingosine kinase 2 isoform X3

    Conserved Domains (1) summary
    PLN02958
    Location:180 → 374
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
Nucleotide Protein
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