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CHSY1 chondroitin sulfate synthase 1 [ Panthera tigris (tiger) ]

Gene ID: 102952320, updated on 10-Mar-2024

Summary

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Gene symbol
CHSY1
Gene description
chondroitin sulfate synthase 1
See related
Ensembl:ENSPTIG00000004486
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See CHSY1 in Genome Data Viewer
Location:
chromosome: B3
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) B3 NC_056665.1 (19420668..19490621, complement)

Chromosome B3 - NC_056665.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat kinase 1 Neighboring gene uncharacterized LOC122239402 Neighboring gene uncharacterized LOC122239403 Neighboring gene uncharacterized LOC122239404 Neighboring gene uncharacterized LOC122239405 Neighboring gene selenoprotein S Neighboring gene small nuclear ribonucleoprotein polypeptide A'

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056665.1 Chromosome B3 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chondroitin sulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056665.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    19420668..19490621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015543693.2 → XP_015399179.2  LOW QUALITY PROTEIN: chondroitin sulfate synthase 1

    UniProtKB/TrEMBL
    A0A8C9J5V5
    Conserved Domains (2) summary
    cl11394
    Location:699 → 737
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl21608
    Location:87 → 308
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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