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SCD stearoyl-CoA desaturase [ Panthera tigris (tiger) ]

Gene ID: 102950164, updated on 15-Nov-2024

Summary

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Gene symbol
SCD
Gene description
stearoyl-CoA desaturase
See related
Ensembl:ENSPTIG00000012317
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human all
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Genomic context

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See SCD in Genome Data Viewer
Location:
chromosome: D2
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) D2 NC_056670.1 (58231960..58247481)
101 previous assembly PanTig1.0 (GCF_000464555.1) Unplaced Scaffold NW_006711821.1 (6323552..6339280)

Chromosome D2 - NC_056670.1Genomic Context describing neighboring genes Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 2 Neighboring gene polycystin 2 like 1, transient receptor potential cation channel Neighboring gene 40S ribosomal protein S25-like Neighboring gene Wnt family member 8B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables palmitoyl-CoA 9-desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables stearoyl-CoA 9-desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in unsaturated fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
stearoyl-CoA desaturase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056670.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    58231960..58247481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007080168.3 → XP_007080230.1  stearoyl-CoA desaturase

    UniProtKB/TrEMBL
    A0A8C9JSR8
    Related
    ENSPTIP00000012127.1
    Conserved Domains (2) summary
    cd03505
    Location:100 → 337
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
    pfam00487
    Location:102 → 306
    FA_desaturase; Fatty acid desaturase
Nucleotide Protein
Heading Accession and Version

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