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HMG20A high mobility group 20A [ Panthera tigris (tiger) ]

Gene ID: 102949120, updated on 10-Mar-2024

Summary

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Gene symbol
HMG20A
Gene description
high mobility group 20A
See related
Ensembl:ENSPTIG00000005492
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See HMG20A in Genome Data Viewer
Location:
chromosome: B3
Exon count:
11
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) B3 NC_056665.1 (30339086..30407845)

Chromosome B3 - NC_056665.1Genomic Context describing neighboring genes Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene uncharacterized LOC122239419 Neighboring gene uncharacterized LOC122239208 Neighboring gene leucine rich repeat and Ig domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056665.1 Chromosome B3 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein 20A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056665.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    30339086..30407845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007084619.3 → XP_007084681.1  high mobility group protein 20A

    See identical proteins and their annotated locations for XP_007084681.1

    UniProtKB/TrEMBL
    A0A8C9JC49
    Related
    ENSPTIP00000002487.1
    Conserved Domains (2) summary
    pfam17380
    Location:64 → 313
    DUF5401; Family of unknown function (DUF5401)
    cd22017
    Location:83 → 186
    HMG-box_HMG20A; high mobility group (HMG)-box found in high mobility group protein 20A (HMG20A) and similar proteins

  2. XM_007084620.3 → XP_007084682.1  high mobility group protein 20A

    See identical proteins and their annotated locations for XP_007084682.1

    UniProtKB/TrEMBL
    A0A8C9JC49
    Conserved Domains (2) summary
    pfam17380
    Location:64 → 313
    DUF5401; Family of unknown function (DUF5401)
    cd22017
    Location:83 → 186
    HMG-box_HMG20A; high mobility group (HMG)-box found in high mobility group protein 20A (HMG20A) and similar proteins
Nucleotide Protein
Heading Accession and Version

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