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PSAP prosaposin [ Panthera tigris (tiger) ]

Gene ID: 102948682, updated on 15-Nov-2024

Summary

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Gene symbol
PSAP
Gene description
prosaposin
See related
Ensembl:ENSPTIG00000017371
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See PSAP in Genome Data Viewer
Location:
chromosome: D2
Exon count:
15
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) D2 NC_056670.1 (31971689..32004899, complement)
101 previous assembly PanTig1.0 (GCF_000464555.1) Unplaced Scaffold NW_006712311.1 (9080144..9113741)

Chromosome D2 - NC_056670.1Genomic Context describing neighboring genes Neighboring gene cadherin related 23 Neighboring gene chromosome D2 C10orf105 homolog Neighboring gene V-set immunoregulatory receptor Neighboring gene U6 spliceosomal RNA Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prosaposin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056670.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    31971689..32004899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007095719.2 → XP_007095781.1  prosaposin isoform X2

    UniProtKB/TrEMBL
    A0A8C9K7I7, A0A8C9KJ85
    Related
    ENSPTIP00000019662.1
    Conserved Domains (4) summary
    smart00162
    Location:21 → 54
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:314 → 388
    SapB; Saposin (B) Domains
    pfam03489
    Location:357 → 388
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:315 → 349
    SapB_1; Saposin-like type B, region 1

  2. XM_007095717.3 → XP_007095779.1  prosaposin isoform X1

    UniProtKB/TrEMBL
    A0A8C9KJ85
    Conserved Domains (4) summary
    smart00162
    Location:21 → 54
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:317 → 391
    SapB; Saposin (B) Domains
    pfam03489
    Location:360 → 391
    SapB_2; Saposin-like type B, region 2
    pfam05184
    Location:318 → 352
    SapB_1; Saposin-like type B, region 1
Nucleotide Protein
Heading Accession and Version

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