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LOC102947920 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102947920, updated on 6-Feb-2024

Summary

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Gene symbol
LOC102947920
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B
Locus tag
UY3_13926
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
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Genomic context

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See LOC102947920 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 20 NC_051260.2 (3906938..3914447)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 22 NC_051262.1 (7237807..7245301, complement)

Chromosome 20 - NC_051260.2Genomic Context describing neighboring genes Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 Neighboring gene poly(U)-specific endoribonuclease-D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051260.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    3906938..3914447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043532826.1 → XP_043388761.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

    Conserved Domains (1) summary
    cl21608
    Location:140 → 224
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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