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CHST1 carbohydrate sulfotransferase 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102947896, updated on 10-Mar-2024

Summary

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Gene symbol
CHST1
Gene description
carbohydrate sulfotransferase 1
Locus tag
UY3_07980
See related
EnsemblRapid:ENSCMYG00015014448
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See CHST1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 6 NC_051246.2 (59972170..59995329, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 5 NC_051245.1 (59972805..59994872, complement)

Chromosome 6 - NC_051246.2Genomic Context describing neighboring genes Neighboring gene astacin-like metalloendopeptidase Neighboring gene transmembrane protein 263 Neighboring gene uncharacterized LOC122466436 Neighboring gene uncharacterized LOC122466437 Neighboring gene uncharacterized LOC122466438

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051246.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    59972170..59995329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007060728.3 → XP_007060790.1  carbohydrate sulfotransferase 1

    See identical proteins and their annotated locations for XP_007060790.1

    UniProtKB/TrEMBL
    M7BAI3
    Related
    ENSCMYP00015022323.1, ENSCMYT00015027134.1
    Conserved Domains (1) summary
    pfam00685
    Location:68 → 392
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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