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ASB3 ankyrin repeat and SOCS box containing 3 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102947415, updated on 10-Mar-2024

Summary

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Gene symbol
ASB3
Gene description
ankyrin repeat and SOCS box containing 3
Locus tag
UY3_19051
See related
EnsemblRapid:ENSCMYG00015003154
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See ASB3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 3 NC_057851.1 (172982354..173108960)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 3 NC_051243.1 (172982410..173108960)

Chromosome 3 - NC_057851.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 2 Neighboring gene G protein-coupled receptor 75 Neighboring gene endoplasmic reticulum lectin 1 Neighboring gene ChaC glutathione specific gamma-glutamylcyclotransferase 2 Neighboring gene uncharacterized LOC122465219 Neighboring gene uncharacterized LOC122464854 Neighboring gene uncharacterized LOC122464856

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SOCS box protein 3
Names
Ankyrin repeat and SOCS box protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057851.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    172982354..173108960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043543810.1 → XP_043399745.1  ankyrin repeat and SOCS box protein 3 isoform X2

    Conserved Domains (3) summary
    PHA02875
    Location:21 → 240
    PHA02875; ankyrin repeat protein; Provisional
    sd00045
    Location:145 → 176
    ANK; ANK repeat [structural motif]
    cl39094
    Location:161 → 367
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_037895885.2 → XP_037751813.1  ankyrin repeat and SOCS box protein 3 isoform X3

    Conserved Domains (3) summary
    PHA02875
    Location:21 → 240
    PHA02875; ankyrin repeat protein; Provisional
    sd00045
    Location:145 → 176
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:150 → 240
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_043543811.1 → XP_043399746.1  ankyrin repeat and SOCS box protein 3 isoform X4

    Conserved Domains (3) summary
    PHA02875
    Location:21 → 256
    PHA02875; ankyrin repeat protein; Provisional
    cd03722
    Location:373 → 423
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:42 → 76
    ANK; ANK repeat [structural motif]

  4. XM_043543809.1 → XP_043399744.1  ankyrin repeat and SOCS box protein 3 isoform X1

    Conserved Domains (4) summary
    PHA02875
    Location:21 → 240
    PHA02875; ankyrin repeat protein; Provisional
    cd03722
    Location:456 → 506
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:145 → 176
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:150 → 240
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_007072402.4 → XP_007072464.3  ankyrin repeat and SOCS box protein 3 isoform X1

    Related
    ENSCMYP00015004761.1, ENSCMYT00015005862.1
    Conserved Domains (4) summary
    PHA02875
    Location:21 → 240
    PHA02875; ankyrin repeat protein; Provisional
    cd03722
    Location:456 → 506
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:145 → 176
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:150 → 240
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_037895883.2 → XP_037751811.1  ankyrin repeat and SOCS box protein 3 isoform X1

    Conserved Domains (4) summary
    PHA02875
    Location:21 → 240
    PHA02875; ankyrin repeat protein; Provisional
    cd03722
    Location:456 → 506
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:145 → 176
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:150 → 240
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_037895884.2 → XP_037751812.1  ankyrin repeat and SOCS box protein 3 isoform X1

    Conserved Domains (4) summary
    PHA02875
    Location:21 → 240
    PHA02875; ankyrin repeat protein; Provisional
    cd03722
    Location:456 → 506
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:145 → 176
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:150 → 240
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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