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ECRG4 ECRG4 augurin precursor [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102946966, updated on 10-Mar-2024

Summary

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Gene symbol
ECRG4
Gene description
ECRG4 augurin precursor
Locus tag
UY3_18903
See related
EnsemblRapid:ENSCMYG00015013812
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Also known as
Augurin; CUNH2orf40
Orthologs
human mouse all
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Genomic context

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See ECRG4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (112690421..112760320, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (112699202..112740681, complement)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 2 Neighboring gene opsin-3 Neighboring gene uncharacterized LOC122463873 Neighboring gene UDP-glucuronate decarboxylase 1 Neighboring gene NCK adaptor protein 2 Neighboring gene uncharacterized LOC122462093

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in G1 to G0 transition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anaphase-promoting complex-dependent catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular senescence IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
augurin
Names
chromosome unknown C2orf40 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    112690421..112760320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043536418.1 → XP_043392353.1  augurin isoform X1

    Conserved Domains (1) summary
    pfam15187
    Location:31 → 147
    Augurin; Oesophageal cancer-related gene 4

  2. XM_037897720.2 → XP_037753648.1  augurin isoform X1

    Related
    ENSCMYP00015021404.1, ENSCMYT00015025921.1
    Conserved Domains (1) summary
    pfam15187
    Location:31 → 147
    Augurin; Oesophageal cancer-related gene 4

  3. XM_007072251.4 → XP_007072313.2  augurin isoform X1

    Conserved Domains (1) summary
    pfam15187
    Location:31 → 147
    Augurin; Oesophageal cancer-related gene 4

  4. XM_043536413.1 → XP_043392348.1  augurin isoform X1

    Conserved Domains (1) summary
    pfam15187
    Location:31 → 147
    Augurin; Oesophageal cancer-related gene 4

  5. XM_043536420.1 → XP_043392355.1  augurin isoform X2

    Conserved Domains (1) summary
    pfam15187
    Location:19 → 135
    Augurin; Oesophageal cancer-related gene 4
Nucleotide Protein
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