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LCT lactase [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102946778, updated on 10-Mar-2024

Summary

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Gene symbol
LCT
Gene description
lactase
Locus tag
UY3_08093
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See LCT in Genome Data Viewer
Location:
chromosome: 11
Exon count:
17
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 11 NC_051251.2 (18739397..18767983, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 11 NC_051251.1 (60754409..60782893)

Chromosome 11 - NC_051251.2Genomic Context describing neighboring genes Neighboring gene R3H domain containing 1 Neighboring gene uncharacterized LOC122462309 Neighboring gene UBX domain protein 4 Neighboring gene uncharacterized LOC119567308 Neighboring gene minichromosome maintenance complex component 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactase-phlorizin hydrolase
Names
Lactase-phlorizin hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051251.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    18739397..18767983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037912855.2 → XP_037768783.1  lactase-phlorizin hydrolase

    UniProtKB/TrEMBL
    M7BRP0
    Conserved Domains (2) summary
    pfam00232
    Location:1377 → 1845
    Glyco_hydro_1; Glycosyl hydrolase family 1
    cl23725
    Location:901 → 1367
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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