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NCAM1 neural cell adhesion molecule 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102946321, updated on 10-Mar-2024

Summary

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Gene symbol
NCAM1
Gene description
neural cell adhesion molecule 1
Locus tag
UY3_07711
See related
EnsemblRapid:ENSCMYG00015002415
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See NCAM1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
24
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 22 NC_051262.2 (14877915..15145689)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 20 NC_051260.1 (4110720..4363745, complement)

Chromosome 22 - NC_051262.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122463584 Neighboring gene uncharacterized LOC122463531 Neighboring gene uncharacterized LOC122463549 Neighboring gene tetratricopeptide repeat domain 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051262.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    14877915..15145689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043533907.1 → XP_043389842.1  neural cell adhesion molecule 1 isoform X1

    UniProtKB/TrEMBL
    M7BAZ0
    Conserved Domains (6) summary
    cd05869
    Location:337 → 443
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:452 → 535
    IG; Immunoglobulin
    cd00063
    Location:539 → 636
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam05109
    Location:867 → 1113
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cd00096
    Location:262 → 266
    Ig; Ig strand B [structural motif]
    cl11960
    Location:242 → 338
    Ig; Immunoglobulin domain

  2. XM_043533912.1 → XP_043389847.1  neural cell adhesion molecule 1 isoform X9

    Conserved Domains (6) summary
    cd05869
    Location:337 → 433
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:155 → 239
    IG; Immunoglobulin
    smart00410
    Location:442 → 525
    IG_like; Immunoglobulin like
    cd00063
    Location:529 → 626
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:262 → 266
    Ig; Ig strand B [structural motif]
    cl11960
    Location:242 → 338
    Ig; Immunoglobulin domain

  3. XM_043533909.1 → XP_043389844.1  neural cell adhesion molecule 1 isoform X4

    Conserved Domains (6) summary
    cd05869
    Location:337 → 433
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:155 → 239
    IG; Immunoglobulin
    smart00410
    Location:442 → 525
    IG_like; Immunoglobulin like
    cd00063
    Location:529 → 626
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:262 → 266
    Ig; Ig strand B [structural motif]
    cl11960
    Location:242 → 338
    Ig; Immunoglobulin domain

  4. XM_043533908.1 → XP_043389843.1  neural cell adhesion molecule 1 isoform X2

    UniProtKB/TrEMBL
    M7BAZ0
    Conserved Domains (7) summary
    cd05869
    Location:306 → 412
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:124 → 208
    IG; Immunoglobulin
    smart00410
    Location:421 → 504
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam05109
    Location:835 → 1081
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cd00096
    Location:231 → 235
    Ig; Ig strand B [structural motif]
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  5. XM_043533911.1 → XP_043389846.1  neural cell adhesion molecule 1 isoform X7

    Conserved Domains (5) summary
    cd05869
    Location:306 → 412
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00410
    Location:421 → 504
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:231 → 235
    Ig; Ig strand B [structural motif]
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  6. XM_027822896.3 → XP_027678697.2  neural cell adhesion molecule 1 isoform X3

    UniProtKB/TrEMBL
    M7BAZ0
    Related
    ENSCMYP00015003643.1, ENSCMYT00015004465.1
    Conserved Domains (8) summary
    cd05869
    Location:306 → 402
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:411 → 494
    IG; Immunoglobulin
    cd00063
    Location:498 → 595
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam05109
    Location:825 → 1071
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam00041
    Location:602 → 685
    fn3; Fibronectin type III domain
    cd00096
    Location:211 → 216
    Ig; Ig strand A [structural motif]
    cd05865
    Location:20 → 116
    IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  7. XM_027822895.3 → XP_027678696.1  neural cell adhesion molecule 1 isoform X8

  8. XM_043533910.1 → XP_043389845.1  neural cell adhesion molecule 1 isoform X5

    Conserved Domains (5) summary
    cd05869
    Location:306 → 412
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00410
    Location:421 → 504
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 605
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:231 → 235
    Ig; Ig strand B [structural motif]
    cl11960
    Location:211 → 307
    Ig; Immunoglobulin domain

  9. XM_027822893.3 → XP_027678694.1  neural cell adhesion molecule 1 isoform X6

Nucleotide Protein
Heading Accession and Version

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