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RFT1 RFT1 homolog [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102946159, updated on 10-Mar-2024

Summary

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Gene symbol
RFT1
Gene description
RFT1 homolog
Locus tag
UY3_03029
See related
EnsemblRapid:ENSCMYG00015012934
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See RFT1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 7 NC_057853.1 (41398543..41433140)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 7 NC_051247.1 (41398634..41433140)

Chromosome 7 - NC_057853.1Genomic Context describing neighboring genes Neighboring gene protein kinase C delta Neighboring gene uncharacterized LOC122466492 Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial-like Neighboring gene uncharacterized LOC119566817 Neighboring gene uncharacterized LOC122466610

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RFT1 homolog
Names
Protein RFT1 like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057853.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    41398543..41433140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037905908.2 → XP_037761836.1  protein RFT1 homolog isoform X1

    UniProtKB/TrEMBL
    M7BRA4
    Related
    ENSCMYP00015020102.1, ENSCMYT00015024288.1
    Conserved Domains (1) summary
    cl09326
    Location:14 → 523
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins

  2. XM_043550605.1 → XP_043406540.1  protein RFT1 homolog isoform X3

    Conserved Domains (1) summary
    cl09326
    Location:11 → 363
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins

  3. XM_043550604.1 → XP_043406539.1  protein RFT1 homolog isoform X2

    Conserved Domains (1) summary
    cl09326
    Location:12 → 418
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins
Nucleotide Protein
Heading Accession and Version

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