U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DSP desmoplakin [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102945966, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
DSP
Gene description
desmoplakin
Locus tag
UY3_11210
See related
EnsemblRapid:ENSCMYG00015004988
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See DSP in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 2 NC_057850.1 (113791671..113842797, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 2 NC_051242.1 (113791671..113841261, complement)

Chromosome 2 - NC_057850.1Genomic Context describing neighboring genes Neighboring gene mevalonyl-coenzyme A hydratase sidH Neighboring gene collagen alpha-1(IX) chain-like Neighboring gene RIO kinase 1 Neighboring gene cancer antigen 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skin development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intercalated disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
desmoplakin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057850.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    113791671..113842797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027826666.3 → XP_027682467.2  desmoplakin isoform X4

    Conserved Domains (7) summary
    smart00250
    Location:1739 → 1775
    PLEC; Plectin repeat
    COG1196
    Location:665 → 1355
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00176
    Location:294 → 459
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:2047 → 2086
    Plectin; Plectin repeat
    pfam17902
    Location:456 → 522
    SH3_10; SH3 domain
    pfam18373
    Location:557 → 633
    Spectrin_like; Spectrin like domain
    cl02488
    Location:199 → 375
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  2. XM_043540141.1 → XP_043396076.1  desmoplakin isoform X3

    UniProtKB/TrEMBL
    M7BHV6
    Conserved Domains (4) summary
    smart00250
    Location:2202 → 2239
    PLEC; Plectin repeat
    COG1196
    Location:868 → 1512
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00176
    Location:294 → 459
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02488
    Location:199 → 375
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  3. XM_007064244.4 → XP_007064306.3  desmoplakin isoform X1

    UniProtKB/TrEMBL
    M7BHV6
    Related
    ENSCMYP00015007653.1, ENSCMYT00015009340.1
    Conserved Domains (9) summary
    PRK01156
    Location:715 → 1226
    PRK01156; chromosome segregation protein; Provisional
    smart00250
    Location:2338 → 2374
    PLEC; Plectin repeat
    COG1196
    Location:1003 → 1848
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00176
    Location:294 → 459
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00681
    Location:2646 → 2685
    Plectin; Plectin repeat
    pfam08317
    Location:1776 → 1931
    Spc7; Spc7 kinetochore protein
    pfam17902
    Location:456 → 522
    SH3_10; SH3 domain
    pfam18373
    Location:557 → 633
    Spectrin_like; Spectrin like domain
    cl02488
    Location:199 → 375
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  4. XM_043540140.1 → XP_043396075.1  desmoplakin isoform X2

    UniProtKB/TrEMBL
    M7BHV6
    Conserved Domains (6) summary
    PRK01156
    Location:643 → 1154
    PRK01156; chromosome segregation protein; Provisional
    smart00250
    Location:2573 → 2610
    PLEC; Plectin repeat
    COG1196
    Location:931 → 1776
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00176
    Location:222 → 387
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR03794
    Location:1681 → 1901
    NHLM_micro_HlyD; NHLM bacteriocin system secretion protein
    cl02488
    Location:127 → 303
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.