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SGCD sarcoglycan delta [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102942159, updated on 10-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Locus tag
UY3_05753
See related
EnsemblRapid:ENSCMYG00015017566
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 8 NC_057854.1 (3551087..4049583, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 8 NC_051248.1 (3551087..4049428, complement)

Chromosome 8 - NC_057854.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 2 homolog Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene small nuclear ribonucleoprotein F Neighboring gene 60S ribosomal protein L18a Neighboring gene uncharacterized LOC122461476

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
Delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057854.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    3551087..4049583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037906780.2 → XP_037762708.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    M7BIM8
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_037906781.1 → XP_037762709.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:20 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_027820892.2 → XP_027676693.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    M7BIM8
    Related
    ENSCMYP00015026893.1, ENSCMYT00015033016.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_043553161.1 → XP_043409096.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    M7BIM8
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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