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SMPD3 sphingomyelin phosphodiesterase 3 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102941840, updated on 10-Mar-2024

Summary

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Gene symbol
SMPD3
Gene description
sphingomyelin phosphodiesterase 3
Locus tag
UY3_01487
See related
EnsemblRapid:ENSCMYG00015004805
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See SMPD3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 12 NC_051252.2 (9851232..10099748, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 14 NC_051254.1 (9850793..10098904, complement)

Chromosome 12 - NC_051252.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114021187 Neighboring gene solute carrier family 7 member 6 Neighboring gene solute carrier family 7 member 6 opposite strand Neighboring gene protein arginine methyltransferase 7 Neighboring gene uncharacterized LOC119563697 Neighboring gene uncharacterized LOC122462615 Neighboring gene phospholipase A2 group XV

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051252.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    9851232..10099748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043526543.1 → XP_043382478.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    M7CJN2
    Conserved Domains (1) summary
    cd09078
    Location:347 → 655
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  2. XM_007053979.4 → XP_007054041.3  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    M7CJN2
    Conserved Domains (1) summary
    cd09078
    Location:347 → 655
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  3. XM_043526542.1 → XP_043382477.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    M7CJN2
    Conserved Domains (1) summary
    cd09078
    Location:347 → 655
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine

  4. XM_043526544.1 → XP_043382479.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    M7CJN2
    Related
    ENSCMYP00015007433.1, ENSCMYT00015008970.1
    Conserved Domains (1) summary
    cd09078
    Location:347 → 655
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine
Nucleotide Protein
Heading Accession and Version

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