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SNAP47 synaptosome associated protein 47 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102941558, updated on 10-Mar-2024

Summary

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Gene symbol
SNAP47
Gene description
synaptosome associated protein 47
Locus tag
UY3_06742
See related
EnsemblRapid:ENSCMYG00015024523
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See SNAP47 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 2 NC_057850.1 (255877296..255913501, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 2 NC_051242.1 (255877292..255913472, complement)

Chromosome 2 - NC_057850.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119565435 Neighboring gene uncharacterized LOC122464789 Neighboring gene jumonji domain containing 4 Neighboring gene ALS2 C-terminal like Neighboring gene transmembrane inner ear

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle fusion to presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle priming IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptosomal-associated protein 47
Names
Synaptosomal-associated protein 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057850.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    255877296..255913501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037891251.2 → XP_037747179.1  synaptosomal-associated protein 47 isoform X2

    UniProtKB/TrEMBL
    M7BDP9
    Conserved Domains (3) summary
    cd15854
    Location:358 → 416
    SNARE_SNAP47C; C-terminal SNARE motif of SNAP47
    cd15888
    Location:108 → 171
    SNARE_SNAP47N; N-terminal SNARE motif of SNAP47
    cl17171
    Location:50 → 98
    PH-like; Pleckstrin homology-like domain

  2. XM_043541690.1 → XP_043397625.1  synaptosomal-associated protein 47 isoform X1

    UniProtKB/TrEMBL
    M7BDP9
    Related
    ENSCMYP00015037425.1, ENSCMYT00015046088.1
    Conserved Domains (3) summary
    cd15854
    Location:390 → 448
    SNARE_SNAP47C; C-terminal SNARE motif of SNAP47
    cd15888
    Location:140 → 203
    SNARE_SNAP47N; N-terminal SNARE motif of SNAP47
    cl17171
    Location:82 → 130
    PH-like; Pleckstrin homology-like domain

  3. XM_037891250.2 → XP_037747178.1  synaptosomal-associated protein 47 isoform X2

    UniProtKB/TrEMBL
    M7BDP9
    Related
    ENSCMYP00015037422.1, ENSCMYT00015046081.1
    Conserved Domains (3) summary
    cd15854
    Location:358 → 416
    SNARE_SNAP47C; C-terminal SNARE motif of SNAP47
    cd15888
    Location:108 → 171
    SNARE_SNAP47N; N-terminal SNARE motif of SNAP47
    cl17171
    Location:50 → 98
    PH-like; Pleckstrin homology-like domain

  4. XM_043541691.1 → XP_043397626.1  synaptosomal-associated protein 47 isoform X2

    UniProtKB/TrEMBL
    M7BDP9
    Conserved Domains (3) summary
    cd15854
    Location:358 → 416
    SNARE_SNAP47C; C-terminal SNARE motif of SNAP47
    cd15888
    Location:108 → 171
    SNARE_SNAP47N; N-terminal SNARE motif of SNAP47
    cl17171
    Location:50 → 98
    PH-like; Pleckstrin homology-like domain

RNA

  1. XR_005224132.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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