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EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102941180, updated on 10-Mar-2024

Summary

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Gene symbol
EDEM3
Gene description
ER degradation enhancing alpha-mannosidase like protein 3
Locus tag
UY3_08278
See related
EnsemblRapid:ENSCMYG00015012321
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See EDEM3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
22
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 8 NC_057854.1 (54619919..54669106, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 8 NC_051248.1 (54619919..54665117, complement)

Chromosome 8 - NC_057854.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L28 Neighboring gene chromosome 8 C1orf21 homolog Neighboring gene niban apoptosis regulator 1 Neighboring gene U6 spliceosomal RNA Neighboring gene ring finger protein 2 Neighboring gene tRNA methyltransferase 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 3
Names
ER degradation-enhancing alpha-mannosidase-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057854.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    54619919..54669106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043521374.1 → XP_043377309.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X1

    Conserved Domains (3) summary
    cd02126
    Location:720 → 846
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    NF012181
    Location:847 → 969
    MSCRAMM_SdrD; MSCRAMM family adhesin SdrD
    cl04955
    Location:107 → 554
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

  2. XM_007061126.4 → XP_007061188.2  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X2

    Related
    ENSCMYP00015019118.1, ENSCMYT00015023192.1
    Conserved Domains (3) summary
    cd02126
    Location:664 → 790
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    pfam01532
    Location:59 → 498
    Glyco_hydro_47; Glycosyl hydrolase family 47
    NF033845
    Location:791 → 909
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  3. XM_043521375.1 → XP_043377310.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X3

    Conserved Domains (2) summary
    cd02126
    Location:720 → 846
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    cl04955
    Location:107 → 554
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

  4. XM_043521376.1 → XP_043377311.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X4

    Conserved Domains (2) summary
    cd02126
    Location:664 → 790
    PA_EDEM3_like; protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I ...
    cl04955
    Location:47 → 498
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins
Nucleotide Protein
Heading Accession and Version

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