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SPTLC1 serine palmitoyltransferase long chain base subunit 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102940812, updated on 10-Mar-2024

Summary

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Gene symbol
SPTLC1
Gene description
serine palmitoyltransferase long chain base subunit 1
Locus tag
UY3_04176
See related
EnsemblRapid:ENSCMYG00015010807
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See SPTLC1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 5 NC_051245.2 (81369177..81420271)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 6 NC_051246.1 (81369247..81420271)

Chromosome 5 - NC_051245.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122465809 Neighboring gene uncharacterized LOC122465810 Neighboring gene CDC42 small effector 2 Neighboring gene histone H3-like Neighboring gene receptor tyrosine kinase like orphan receptor 2 Neighboring gene uncharacterized LOC119566540 Neighboring gene nuclear factor, interleukin 3 regulated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 1
Names
Serine palmitoyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051245.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    81369177..81420271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037901663.2 → XP_037757591.1  serine palmitoyltransferase 1 isoform X1

    Related
    ENSCMYP00015016809.1, ENSCMYT00015020341.1
    Conserved Domains (1) summary
    cl18945
    Location:28 → 476
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. XM_043546881.1 → XP_043402816.1  serine palmitoyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    M7BS66
    Conserved Domains (1) summary
    cl18945
    Location:9 → 387
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  3. XM_043546882.1 → XP_043402817.1  serine palmitoyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    M7BS66
    Conserved Domains (1) summary
    cl18945
    Location:1 → 317
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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