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STBD1 starch binding domain 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102940621, updated on 10-Mar-2024

Summary

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Gene symbol
STBD1
Gene description
starch binding domain 1
See related
EnsemblRapid:ENSCMYG00015013359
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See STBD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 4 NC_057852.1 (15111680..15114780)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 4 NC_051244.1 (15111669..15114782)

Chromosome 4 - NC_057852.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor class B member 2 Neighboring gene family with sequence similarity 47 member E Neighboring gene coiled-coil domain containing 158 Neighboring gene uncharacterized LOC122465452 Neighboring gene protein Shroom3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057852.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    15111680..15114780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037896720.2 → XP_037752648.1  starch-binding domain-containing protein 1 isoform X1

    Related
    ENSCMYP00015020727.1, ENSCMYT00015025085.1
    Conserved Domains (1) summary
    cd05813
    Location:282 → 376
    CBM20_genethonin_1; Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch ...

  2. XM_043545635.1 → XP_043401570.1  starch-binding domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cd05813
    Location:264 → 358
    CBM20_genethonin_1; Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch ...
Nucleotide Protein
Heading Accession and Version

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