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DGKB diacylglycerol kinase beta [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102939915, updated on 18-Sep-2024

Summary

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Gene symbol
DGKB
Gene description
diacylglycerol kinase beta
See related
EnsemblRapid:ENSCMYG00015024697
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See DGKB in Genome Data Viewer
Location:
chromosome: 2
Exon count:
26
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 2 NC_057850.1 (208221748..208722686)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 2 NC_051242.1 (208288673..208721825)

Chromosome 2 - NC_057850.1Genomic Context describing neighboring genes Neighboring gene alkylglycerol monooxygenase Neighboring gene uncharacterized LOC122464720 Neighboring gene ETS variant transcription factor 1 Neighboring gene uncharacterized LOC122464721

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP-dependent diacylglycerol kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in diacylglycerol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
diacylglycerol kinase beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057850.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    208221748..208722686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043541125.1 → XP_043397060.1  diacylglycerol kinase beta isoform X1

    Related
    ENSCMYP00015037677.1, ENSCMYT00015046424.1
    Conserved Domains (6) summary
    smart00045
    Location:569 → 749
    DAGKa; Diacylglycerol kinase accessory domain (presumed)
    smart00046
    Location:427 → 548
    DAGKc; Diacylglycerol kinase catalytic domain (presumed)
    cd00051
    Location:152 → 221
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam14513
    Location:6 → 148
    DAG_kinase_N; Diacylglycerol kinase N-terminus
    cd20845
    Location:237 → 302
    C1_DGKbeta_rpt1; first protein kinase C conserved region 1 (C1 domain) found in diacylglycerol kinase beta (DAG kinase beta) and similar proteins
    cd20891
    Location:307 → 365
    C1_DGKbeta_rpt2; second protein kinase C conserved region 1 (C1 domain) found in diacylglycerol kinase beta (DAG kinase beta) and similar proteins

  2. XM_037890594.2 → XP_037746522.1  diacylglycerol kinase beta isoform X1

    Conserved Domains (6) summary
    smart00045
    Location:569 → 749
    DAGKa; Diacylglycerol kinase accessory domain (presumed)
    smart00046
    Location:427 → 548
    DAGKc; Diacylglycerol kinase catalytic domain (presumed)
    cd00051
    Location:152 → 221
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam14513
    Location:6 → 148
    DAG_kinase_N; Diacylglycerol kinase N-terminus
    cd20845
    Location:237 → 302
    C1_DGKbeta_rpt1; first protein kinase C conserved region 1 (C1 domain) found in diacylglycerol kinase beta (DAG kinase beta) and similar proteins
    cd20891
    Location:307 → 365
    C1_DGKbeta_rpt2; second protein kinase C conserved region 1 (C1 domain) found in diacylglycerol kinase beta (DAG kinase beta) and similar proteins

  3. XM_043541126.1 → XP_043397061.1  diacylglycerol kinase beta isoform X2

    Related
    ENSCMYP00015037680.1, ENSCMYT00015046427.1
    Conserved Domains (4) summary
    smart00109
    Location:237 → 286
    C1; Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)
    smart00045
    Location:562 → 742
    DAGKa; Diacylglycerol kinase accessory domain (presumed)
    smart00046
    Location:420 → 541
    DAGKc; Diacylglycerol kinase catalytic domain (presumed)
    cd00051
    Location:145 → 214
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
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