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OCRL OCRL inositol polyphosphate-5-phosphatase [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102939662, updated on 10-Mar-2024

Summary

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Gene symbol
OCRL
Gene description
OCRL inositol polyphosphate-5-phosphatase
Locus tag
UY3_10772
See related
EnsemblRapid:ENSCMYG00015020214
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See OCRL in Genome Data Viewer
Location:
chromosome: 9
Exon count:
25
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 9 NC_057855.1 (59884128..59913651)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 9 NC_051249.1 (59884720..59913651)

Chromosome 9 - NC_057855.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl cis/trans isomerase, NIMA-interacting 4 Neighboring gene ERCC excision repair 6 like, spindle assembly checkpoint helicase Neighboring gene apelin Neighboring gene X-prolyl aminopeptidase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inositol polyphosphate 5-phosphatase OCRL
Names
Inositol polyphosphate 5-phosphatase OCRL-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057855.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    59884128..59913651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043522417.1 → XP_043378352.1  inositol polyphosphate 5-phosphatase OCRL isoform X5

    Related
    ENSCMYP00015030841.1, ENSCMYT00015038009.1
    Conserved Domains (2) summary
    cd09093
    Location:71 → 364
    INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
    cd04380
    Location:499 → 720
    RhoGAP_OCRL1; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and ...

  2. XM_037908796.2 → XP_037764724.1  inositol polyphosphate 5-phosphatase OCRL isoform X1

    UniProtKB/TrEMBL
    M7BVE1
    Conserved Domains (3) summary
    cd09093
    Location:240 → 533
    INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
    cd04380
    Location:668 → 897
    RhoGAP_OCRL1; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and ...
    pfam16726
    Location:16 → 115
    OCRL_clath_bd; Inositol polyphosphate 5-phosphatase clathrin binding domain

  3. XM_037908795.2 → XP_037764723.1  inositol polyphosphate 5-phosphatase OCRL isoform X3

    UniProtKB/TrEMBL
    M7BVE1
    Related
    ENSCMYP00015030849.1, ENSCMYT00015038024.1
    Conserved Domains (3) summary
    cd09093
    Location:240 → 533
    INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
    cd04380
    Location:668 → 889
    RhoGAP_OCRL1; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and ...
    pfam16726
    Location:16 → 115
    OCRL_clath_bd; Inositol polyphosphate 5-phosphatase clathrin binding domain

  4. XM_037908794.2 → XP_037764722.1  inositol polyphosphate 5-phosphatase OCRL isoform X2

    UniProtKB/TrEMBL
    M7BVE1
    Conserved Domains (3) summary
    cd09093
    Location:237 → 530
    INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
    cd04380
    Location:665 → 894
    RhoGAP_OCRL1; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and ...
    pfam16726
    Location:13 → 112
    OCRL_clath_bd; Inositol polyphosphate 5-phosphatase clathrin binding domain

  5. XM_043522416.1 → XP_043378351.1  inositol polyphosphate 5-phosphatase OCRL isoform X4

    UniProtKB/TrEMBL
    M7BVE1
    Conserved Domains (3) summary
    cd09093
    Location:237 → 530
    INPP5c_INPP5B; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Type II inositol polyphosphate 5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and related proteins
    cd04380
    Location:665 → 886
    RhoGAP_OCRL1; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and ...
    cl17171
    Location:5 → 109
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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