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EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102938981, updated on 10-Mar-2024

Summary

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Gene symbol
EDEM1
Gene description
ER degradation enhancing alpha-mannosidase like protein 1
See related
EnsemblRapid:ENSCMYG00015005263
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See EDEM1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 7 NC_057853.1 (15470827..15498815)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 7 NC_051247.1 (15470828..15498815)

Chromosome 7 - NC_057853.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene basic helix-loop-helix family member e40 Neighboring gene uncharacterized LOC122466667 Neighboring gene ARF like GTPase 8B Neighboring gene glutamate metabotropic receptor 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057853.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    15470827..15498815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043552452.1 → XP_043408387.1  ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X1

    Conserved Domains (1) summary
    cl04955
    Location:108 → 573
    LanC_like; Cyclases involved in the biosynthesis of lantibiotics, and similar proteins

  2. XM_037903847.1 → XP_037759775.1  ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X2

    Related
    ENSCMYP00015008042.1, ENSCMYT00015009836.1
    Conserved Domains (1) summary
    pfam01532
    Location:114 → 559
    Glyco_hydro_47; Glycosyl hydrolase family 47
Nucleotide Protein
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