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ACER1 alkaline ceramidase 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102938631, updated on 10-Mar-2024

Summary

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Gene symbol
ACER1
Gene description
alkaline ceramidase 1
See related
EnsemblRapid:ENSCMYG00015009660
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See ACER1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 25 NC_057858.1 (6834890..6866042)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 25 NC_051265.1 (6829160..6867290)

Chromosome 25 - NC_057858.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 414 Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member B Neighboring gene MLLT1 super elongation complex subunit Neighboring gene uncharacterized LOC122463844

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057858.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    6834890..6866042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037885909.2 → XP_037741837.1  alkaline ceramidase 1

    Related
    ENSCMYP00015014895.1, ENSCMYT00015018059.1
    Conserved Domains (1) summary
    pfam05875
    Location:3 → 254
    Ceramidase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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