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AGA aspartylglucosaminidase [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102937597, updated on 10-Mar-2024

Summary

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Gene symbol
AGA
Gene description
aspartylglucosaminidase
Locus tag
UY3_13980
See related
EnsemblRapid:ENSCMYG00015002188
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See AGA in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 4 NC_057852.1 (75626058..75645204, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 4 NC_051244.1 (75628848..75645165, complement)

Chromosome 4 - NC_057852.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122465489 Neighboring gene nei like DNA glycosylase 3 Neighboring gene uncharacterized LOC122465720 Neighboring gene uncharacterized LOC122465659

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deglycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057852.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    75626058..75645204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043546022.1 → XP_043401957.1  N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase isoform X2

    Conserved Domains (1) summary
    cd04513
    Location:50 → 317
    Glycosylasparaginase; Glycosylasparaginase and similar proteins

  2. XM_007067075.4 → XP_007067137.2  N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase isoform X1

    Related
    ENSCMYP00015003309.1, ENSCMYT00015004047.1
    Conserved Domains (1) summary
    cd04513
    Location:50 → 354
    Glycosylasparaginase; Glycosylasparaginase and similar proteins

RNA

  1. XR_006290742.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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