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CENPC centromere protein C [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102935832, updated on 10-Mar-2024

Summary

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Gene symbol
CENPC
Gene description
centromere protein C
See related
EnsemblRapid:ENSCMYG00015000179
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See CENPC in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 4 NC_057852.1 (10361929..10431229, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 4 NC_051244.1 (10361929..10431070, complement)

Chromosome 4 - NC_057852.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122465538 Neighboring gene uncharacterized LOC122465539 Neighboring gene signal transducing adaptor family member 1 Neighboring gene ubiquitin like modifier activating enzyme 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables centromeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in attachment of mitotic spindle microtubules to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kinetochore assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spindle attachment to meiosis I kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centromere protein C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057852.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    10361929..10431229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037896592.2 → XP_037752520.1  centromere protein C isoform X3

    Related
    ENSCMYP00015000234.1, ENSCMYT00015000314.1
    Conserved Domains (3) summary
    PTZ00108
    Location:314 → 562
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    pfam15622
    Location:6 → 262
    CENP_C_N; Kinetochore assembly subunit CENP-C N-terminal
    cl40423
    Location:882 → 963
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_043545306.1 → XP_043401241.1  centromere protein C isoform X4

    Conserved Domains (2) summary
    PTZ00108
    Location:314 → 561
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cl40423
    Location:889 → 962
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_043545311.1 → XP_043401246.1  centromere protein C isoform X9

    Conserved Domains (2) summary
    PTZ00108
    Location:314 → 562
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cl40423
    Location:877 → 950
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_043545310.1 → XP_043401245.1  centromere protein C isoform X8

    Conserved Domains (2) summary
    PTZ00108
    Location:314 → 562
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cl40423
    Location:878 → 951
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_037896594.2 → XP_037752522.1  centromere protein C isoform X5

    Related
    ENSCMYP00015000233.1, ENSCMYT00015000313.1
    Conserved Domains (3) summary
    PTZ00108
    Location:310 → 558
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    pfam15622
    Location:2 → 258
    CENP_C_N; Kinetochore assembly subunit CENP-C N-terminal
    cl40423
    Location:878 → 959
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_043545305.1 → XP_043401240.1  centromere protein C isoform X2

    Conserved Domains (3) summary
    PTZ00108
    Location:317 → 564
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    pfam15622
    Location:9 → 265
    CENP_C_N; Kinetochore assembly subunit CENP-C N-terminal
    cl40423
    Location:884 → 965
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_043545309.1 → XP_043401244.1  centromere protein C isoform X7

    Conserved Domains (2) summary
    PTZ00108
    Location:317 → 565
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cl40423
    Location:880 → 953
    cupin_RmlC-like; RmlC-like cupin superfamily

  8. XM_043545308.1 → XP_043401243.1  centromere protein C isoform X6

    Conserved Domains (2) summary
    PTZ00108
    Location:317 → 565
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    cl40423
    Location:881 → 954
    cupin_RmlC-like; RmlC-like cupin superfamily

  9. XM_043545304.1 → XP_043401239.1  centromere protein C isoform X1

    Related
    ENSCMYP00015000232.1, ENSCMYT00015000312.1
    Conserved Domains (3) summary
    PTZ00108
    Location:317 → 565
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    pfam15622
    Location:9 → 265
    CENP_C_N; Kinetochore assembly subunit CENP-C N-terminal
    cl40423
    Location:885 → 966
    cupin_RmlC-like; RmlC-like cupin superfamily

RNA

  1. XR_006290358.1 RNA Sequence

  2. XR_006290359.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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