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SYP synaptophysin [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102934268, updated on 10-Mar-2024

Summary

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Gene symbol
SYP
Gene description
synaptophysin
See related
EnsemblRapid:ENSCMYG00015012642
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See SYP in Genome Data Viewer
Location:
chromosome: 23
Exon count:
9
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 23 NC_051263.2 (18474631..18494499)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 23 Unlocalized Scaffold NW_023618337.1 (8089276..8101293)

Chromosome 23 - NC_051263.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 120 Neighboring gene transcription factor binding to IGHM enhancer 3 Neighboring gene three prime repair exonuclease 2 Neighboring gene emerin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptophysin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051263.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    18474631..18494499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043534411.1 → XP_043390346.1  synaptophysin isoform X1

    Related
    ENSCMYP00015019598.1, ENSCMYT00015023745.1
    Conserved Domains (1) summary
    pfam01284
    Location:74 → 274
    MARVEL; Membrane-associating domain

  2. XM_037888653.2 → XP_037744581.1  synaptophysin isoform X2

    Related
    ENSCMYP00015019595.1, ENSCMYT00015023742.1
    Conserved Domains (1) summary
    pfam01284
    Location:16 → 216
    MARVEL; Membrane-associating domain
Nucleotide Protein
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