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PTGS1 prostaglandin-endoperoxide synthase 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102933336, updated on 10-Mar-2024

Summary

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Gene symbol
PTGS1
Gene description
prostaglandin-endoperoxide synthase 1
Locus tag
UY3_08174
See related
EnsemblRapid:ENSCMYG00015007916
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See PTGS1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 16 NC_057857.1 (21506671..21545860)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 16 NC_051256.1 (21506927..21545933)

Chromosome 16 - NC_057857.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 18 Neighboring gene uncharacterized LOC122463157 Neighboring gene mitochondrial ribosome recycling factor Neighboring gene uncharacterized LOC114019737 Neighboring gene phosducin like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables prostaglandin-endoperoxide synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cyclooxygenase pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prostaglandin G/H synthase 1
Names
Prostaglandin G/H synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057857.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    21506671..21545860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027823449.3 → XP_027679250.2  prostaglandin G/H synthase 1 isoform X1

    UniProtKB/TrEMBL
    M7BR72
    Conserved Domains (2) summary
    cd09816
    Location:83 → 569
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins
    cd00054
    Location:26 → 63
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  2. XM_027823450.3 → XP_027679251.2  prostaglandin G/H synthase 1 isoform X2

    UniProtKB/TrEMBL
    M7BR72
    Related
    ENSCMYP00015012188.1, ENSCMYT00015014815.1
    Conserved Domains (2) summary
    cd09816
    Location:60 → 546
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins
    cd00054
    Location:4 → 40
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  3. XM_037879737.2 → XP_037735665.1  prostaglandin G/H synthase 1 isoform X3

    UniProtKB/TrEMBL
    M7BR72
    Conserved Domains (1) summary
    cd09816
    Location:43 → 529
    prostaglandin_endoperoxide_synthase; Animal prostaglandin endoperoxide synthase and related bacterial proteins
Nucleotide Protein
Heading Accession and Version

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