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CHST12 carbohydrate sulfotransferase 12 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102932531, updated on 10-Mar-2024

Summary

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Gene symbol
CHST12
Gene description
carbohydrate sulfotransferase 12
Locus tag
UY3_12237
See related
EnsemblRapid:ENSCMYG00015012670
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See CHST12 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 10 NC_051250.2 (11528841..11539799, complement)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 10 NC_051250.1 (72514444..72525411)

Chromosome 10 - NC_051250.2Genomic Context describing neighboring genes Neighboring gene galectin-related inter-fiber protein Neighboring gene galanin receptor type 1 Neighboring gene uncharacterized LOC114020743 Neighboring gene kinesin-like protein KIF19 Neighboring gene eukaryotic translation initiation factor 3 subunit B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051250.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    11528841..11539799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037911351.2 → XP_037767279.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    M7BR55
    Related
    ENSCMYP00015019660.1, ENSCMYT00015023807.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family

  2. XM_043523687.1 → XP_043379622.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    M7BR55
    Related
    ENSCMYP00015019652.1, ENSCMYT00015023799.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family

  3. XM_037911352.2 → XP_037767280.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    M7BR55
    Related
    ENSCMYP00015019650.1, ENSCMYT00015023797.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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