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CHKA choline kinase alpha [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102931597, updated on 10-Mar-2024

Summary

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Gene symbol
CHKA
Gene description
choline kinase alpha
See related
EnsemblRapid:ENSCMYG00015019358
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See CHKA in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 6 NC_051246.2 (23181021..23220180)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 5 NC_051245.1 (23181250..23220180)

Chromosome 6 - NC_051246.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122466423 Neighboring gene lysine methyltransferase 5B Neighboring gene uncharacterized LOC114018711 Neighboring gene synaptotagmin-A-like Neighboring gene uncharacterized LOC122466210 Neighboring gene ribonuclease/angiogenin inhibitor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051246.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    23181021..23220180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037899533.2 → XP_037755461.1  choline kinase alpha

    Related
    ENSCMYP00015029668.1, ENSCMYT00015036347.1
    Conserved Domains (2) summary
    PHA03247
    Location:8 → 80
    PHA03247; large tegument protein UL36; Provisional
    cd05156
    Location:100 → 441
    ChoK_euk; Euykaryotic Choline Kinase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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