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GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102931376, updated on 10-Mar-2024

Summary

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Gene symbol
GDPD1
Gene description
glycerophosphodiester phosphodiesterase domain containing 1
Locus tag
UY3_05015
See related
EnsemblRapid:ENSCMYG00015011662
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See GDPD1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 17 NC_051257.2 (5021476..5066586)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 17 NC_051257.1 (20135614..20180877, complement)

Chromosome 17 - NC_051257.2Genomic Context describing neighboring genes Neighboring gene spindle and kinetochore associated complex subunit 2 Neighboring gene proline rich 11 Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene uncharacterized LOC122463206 Neighboring gene yippee like 2 Neighboring gene DEAH-box helicase 40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysophospholipase D GDPD1
Names
Glycerophosphodiester phosphodiesterase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_051257.2 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    5021476..5066586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043531345.1 → XP_043387280.1  lysophospholipase D GDPD1 isoform X7

    UniProtKB/TrEMBL
    M7CAP7
    Conserved Domains (1) summary
    cd08612
    Location:1 → 255
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  2. XM_043531346.1 → XP_043387281.1  lysophospholipase D GDPD1 isoform X7

    UniProtKB/TrEMBL
    M7CAP7
    Conserved Domains (1) summary
    cd08612
    Location:1 → 255
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  3. XM_043531341.1 → XP_043387276.1  lysophospholipase D GDPD1 isoform X1

    Conserved Domains (1) summary
    cd08612
    Location:127 → 330
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  4. XM_043531342.1 → XP_043387277.1  lysophospholipase D GDPD1 isoform X1

    Conserved Domains (1) summary
    cd08612
    Location:127 → 330
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  5. XM_043531344.1 → XP_043387279.1  lysophospholipase D GDPD1 isoform X4

    Conserved Domains (1) summary
    cl14615
    Location:127 → 310
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  6. XM_043531343.1 → XP_043387278.1  lysophospholipase D GDPD1 isoform X2

    Conserved Domains (1) summary
    cl14615
    Location:127 → 278
    PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

  7. XM_037880892.2 → XP_037736820.1  lysophospholipase D GDPD1 isoform X3

    Conserved Domains (1) summary
    cd08612
    Location:13 → 310
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  8. XM_007057644.4 → XP_007057706.3  lysophospholipase D GDPD1 isoform X3

    Related
    ENSCMYP00015018132.1, ENSCMYT00015021906.1
    Conserved Domains (1) summary
    cd08612
    Location:13 → 310
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  9. XM_037880895.2 → XP_037736823.1  lysophospholipase D GDPD1 isoform X6

    Conserved Domains (1) summary
    cd08612
    Location:13 → 288
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  10. XM_037880894.2 → XP_037736822.1  lysophospholipase D GDPD1 isoform X5

    Related
    ENSCMYP00015018143.1, ENSCMYT00015021924.1
    Conserved Domains (1) summary
    cd08612
    Location:13 → 290
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  11. XM_037880896.2 → XP_037736824.1  lysophospholipase D GDPD1 isoform X7

    UniProtKB/TrEMBL
    M7CAP7
    Conserved Domains (1) summary
    cd08612
    Location:1 → 255
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
Nucleotide Protein
Heading Accession and Version

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