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ACER3 alkaline ceramidase 3 [ Chelonia mydas (Green sea turtle) ]

Gene ID: 102929469, updated on 18-Sep-2024

Summary

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Gene symbol
ACER3
Gene description
alkaline ceramidase 3
Locus tag
UY3_08561
Gene type
protein coding
RefSeq status
MODEL
Organism
Chelonia mydas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
Orthologs
human mouse all
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Genomic context

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See ACER3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
103 current rCheMyd1.pri.v2 (GCF_015237465.2) 1 NC_057849.1 (15939367..16017535)
102 previous assembly rCheMyd1.pri (GCF_015237465.1) 1 NC_051241.1 (15939396..16017535)

Chromosome 1 - NC_057849.1Genomic Context describing neighboring genes Neighboring gene tsukushi, small leucine rich proteoglycan Neighboring gene uncharacterized LOC114019849 Neighboring gene calpain 5 Neighboring gene U1 spliceosomal RNA Neighboring gene olfactory marker protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phytosphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rCheMyd1.pri.v2 Primary Assembly

Genomic

  1. NC_057849.1 Reference rCheMyd1.pri.v2 Primary Assembly

    Range
    15939367..16017535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037884488.2 → XP_037740416.1  alkaline ceramidase 3 isoform X1

    Conserved Domains (1) summary
    pfam05875
    Location:9 → 260
    Ceramidase

  2. XM_043527855.1 → XP_043383790.1  alkaline ceramidase 3 isoform X2

  3. XM_043527853.1 → XP_043383788.1  alkaline ceramidase 3 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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