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Eri3 ERI1 exoribonuclease family member 3 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102928874, updated on 10-Mar-2024

Summary

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Gene symbol
Eri3
Gene description
ERI1 exoribonuclease family member 3
See related
Ensembl:ENSPEMG00000024037
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Eri3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 2 NC_056009.1 (132979518..133112982)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501702.1 (10191..117705, complement)

Chromosome 2 - NC_056009.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 220 Neighboring gene ubiquitin-40S ribosomal protein S27a-like Neighboring gene U6 spliceosomal RNA Neighboring gene DNA methyltransferase 1 associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ERI1 exoribonuclease 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056009.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    132979518..133112982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042271702.1 → XP_042127636.1  ERI1 exoribonuclease 3 isoform X4

    UniProtKB/TrEMBL
    A0A6J0CIV2
    Conserved Domains (1) summary
    cd06133
    Location:68 → 245
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  2. XM_042271699.1 → XP_042127633.1  ERI1 exoribonuclease 3 isoform X1

    UniProtKB/TrEMBL
    A0A6J0CL87, A0A8C8UDI9
    Conserved Domains (1) summary
    cd06133
    Location:146 → 323
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  3. XM_042271700.1 → XP_042127634.1  ERI1 exoribonuclease 3 isoform X2

    UniProtKB/TrEMBL
    A0A6I9MG41
    Conserved Domains (1) summary
    cd06133
    Location:144 → 321
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  4. XM_042271701.1 → XP_042127635.1  ERI1 exoribonuclease 3 isoform X3

    Conserved Domains (1) summary
    cd06133
    Location:146 → 281
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  5. XM_042271703.1 → XP_042127637.1  ERI1 exoribonuclease 3 isoform X5

    Conserved Domains (1) summary
    cd06133
    Location:1 → 146
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
Nucleotide Protein
Heading Accession and Version

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