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Atxn2 ataxin 2 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102921483, updated on 10-Mar-2024

Summary

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Gene symbol
Atxn2
Gene description
ataxin 2
See related
Ensembl:ENSPEMG00000015340
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Atxn2 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
25
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) 23 NC_056030.1 (13097927..13163832)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501042.1 (6123315..6189134, complement)

Chromosome 23 - NC_056030.1Genomic Context describing neighboring genes Neighboring gene BRCA1 associated protein Neighboring gene nucleolar protein 11 Neighboring gene uncharacterized LOC121825480 Neighboring gene SH2B adaptor protein 3 Neighboring gene PH domain containing endocytic trafficking adaptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056030.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    13097927..13163832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042268469.1 → XP_042124403.1  ataxin-2 isoform X11

    UniProtKB/TrEMBL
    A0A8C8TNP2
    Conserved Domains (4) summary
    TIGR01628
    Location:634 → 801
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:663 → 1027
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:87 → 276
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]

  2. XM_042268460.1 → XP_042124394.1  ataxin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C8TNP2
    Conserved Domains (5) summary
    TIGR01628
    Location:684 → 851
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:713 → 1077
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:125 → 314
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:351 → 527
    PRK12323; DNA polymerase III subunit gamma/tau

  3. XM_042268465.1 → XP_042124399.1  ataxin-2 isoform X6

    Conserved Domains (4) summary
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:659 → 1030
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:125 → 314
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:351 → 527
    PRK12323; DNA polymerase III subunit gamma/tau

  4. XM_042268463.1 → XP_042124397.1  ataxin-2 isoform X4

    UniProtKB/TrEMBL
    A0A8C8TNP2
    Conserved Domains (4) summary
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    COG5180
    Location:125 → 314
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK07764
    Location:706 → 1062
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK12323
    Location:351 → 527
    PRK12323; DNA polymerase III subunit gamma/tau

  5. XM_042268461.1 → XP_042124395.1  ataxin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C8TNP2
    Conserved Domains (5) summary
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:713 → 1075
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:125 → 314
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:643 → 773
    PRK10263; DNA translocase FtsK; Provisional
    PRK12323
    Location:351 → 527
    PRK12323; DNA polymerase III subunit gamma/tau

  6. XM_042268464.1 → XP_042124398.1  ataxin-2 isoform X5

    UniProtKB/TrEMBL
    A0A8C8TNP2
    Conserved Domains (4) summary
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:706 → 1055
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:125 → 314
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:351 → 527
    PRK12323; DNA polymerase III subunit gamma/tau

  7. XM_042268462.1 → XP_042124396.1  ataxin-2 isoform X3

    UniProtKB/TrEMBL
    A0A8C8TNP2
    Conserved Domains (4) summary
    TIGR01628
    Location:672 → 839
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:701 → 1065
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:125 → 314
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]

  8. XM_042268468.1 → XP_042124402.1  ataxin-2 isoform X10

    Conserved Domains (4) summary
    TIGR01628
    Location:602 → 769
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:631 → 995
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:125 → 314
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]

  9. XM_042268466.1 → XP_042124400.1  ataxin-2 isoform X7

    UniProtKB/TrEMBL
    A0A8C8TNP2
    Conserved Domains (5) summary
    TIGR01628
    Location:646 → 813
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:675 → 1039
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:87 → 276
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK12323
    Location:313 → 489
    PRK12323; DNA polymerase III subunit gamma/tau

  10. XM_015996878.2 → XP_015852364.1  ataxin-2 isoform X8

    UniProtKB/TrEMBL
    A0A6J0DBB0, A0A8C8TNP2
    Conserved Domains (3) summary
    pfam06741
    Location:142 → 203
    LsmAD; LsmAD domain
    pfam07145
    Location:642 → 658
    PAM2; Ataxin-2 C-terminal region
    pfam14438
    Location:1 → 69
    SM-ATX; Ataxin 2 SM domain

  11. XM_015996884.2 → XP_015852370.1  ataxin-2 isoform X9

    UniProtKB/TrEMBL
    A0A6J0DBM6, A0A8C8TNP2
    Related
    ENSPEMP00000015974.1
    Conserved Domains (3) summary
    pfam06741
    Location:142 → 203
    LsmAD; LsmAD domain
    pfam07145
    Location:642 → 658
    PAM2; Ataxin-2 C-terminal region
    pfam14438
    Location:1 → 69
    SM-ATX; Ataxin 2 SM domain

  12. XM_042268470.1 → XP_042124404.1  ataxin-2 isoform X12

    Conserved Domains (4) summary
    cd00600
    Location:5 → 72
    Sm_like; Sm and related proteins
    PHA03247
    Location:593 → 957
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:87 → 276
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:523 → 653
    PRK10263; DNA translocase FtsK; Provisional
Nucleotide Protein
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