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Trex2 three prime repair exonuclease 2 [ Peromyscus maniculatus bairdii (prairie deer mouse) ]

Gene ID: 102908510, updated on 10-Mar-2024

Summary

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Gene symbol
Trex2
Gene description
three prime repair exonuclease 2
See related
Ensembl:ENSPEMG00000004918
Gene type
protein coding
RefSeq status
MODEL
Organism
Peromyscus maniculatus bairdii (sub-species: bairdii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Neotominae; Peromyscus
Orthologs
human mouse all
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Genomic context

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See Trex2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Annotation release Status Assembly Chr Location
102 current HU_Pman_2.1.3 (GCF_003704035.1) X NC_056031.1 (3170979..3174480)
101 previous assembly Pman_1.0 (GCF_000500345.1) Unplaced Scaffold NW_006501630.1 (1407876..1411387)

Chromosome X - NC_056031.1Genomic Context describing neighboring genes Neighboring gene biglycan Neighboring gene HAUS augmin like complex subunit 7 Neighboring gene ZFP92 zinc finger protein Neighboring gene ubiquitin carboxyl-terminal hydrolase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
three prime repair exonuclease 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Peromyscus maniculatus bairdii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HU_Pman_2.1.3 Primary Assembly

Genomic

  1. NC_056031.1 Reference HU_Pman_2.1.3 Primary Assembly

    Range
    3170979..3174480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042268896.1 → XP_042124830.1  three prime repair exonuclease 2

    UniProtKB/TrEMBL
    A0A6J0CH10
    Conserved Domains (1) summary
    cd06136
    Location:10 → 204
    TREX1_2; DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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