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PYGM glycogen phosphorylase, muscle associated [ Pteropus alecto (black flying fox) ]

Gene ID: 102897270, updated on 30-Mar-2024

Summary

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Gene symbol
PYGM
Gene description
glycogen phosphorylase, muscle associated
Locus tag
PAL_GLEAN10011411
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See PYGM in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006435764.1 (6134873..6150195)

NW_006435764.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase kinase 2 Neighboring gene splicing factor 1 Neighboring gene RAS guanyl releasing protein 2 Neighboring gene neurexin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006435764 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen phosphorylase, muscle form
Names
Glycogen phosphorylase, muscle form
phosphorylase, glycogen, muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006435764.1 Reference ASM32557v1 Primary Assembly

    Range
    6134873..6150195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006911140.2 → XP_006911202.1  glycogen phosphorylase, muscle form isoform X2

    UniProtKB/TrEMBL
    L5KQ15
    Conserved Domains (2) summary
    cd04300
    Location:118 → 917
    GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
    TIGR02093
    Location:121 → 917
    P_ylase; glycogen/starch/alpha-glucan phosphorylases

  2. XM_006911141.2 → XP_006911203.1  glycogen phosphorylase, muscle form isoform X3

    UniProtKB/TrEMBL
    L5KQ15
    Conserved Domains (2) summary
    cd04300
    Location:118 → 829
    GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
    TIGR02093
    Location:121 → 829
    P_ylase; glycogen/starch/alpha-glucan phosphorylases

  3. XM_006911142.2 → XP_006911204.2  glycogen phosphorylase, muscle form isoform X1

    UniProtKB/TrEMBL
    L5KQ15
    Conserved Domains (1) summary
    cd04300
    Location:118 → 883
    GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
Nucleotide Protein
Heading Accession and Version

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