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TKT transketolase [ Pteropus alecto (black flying fox) ]

Gene ID: 102892449, updated on 30-Mar-2024

Summary

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Gene symbol
TKT
Gene description
transketolase
Locus tag
PAL_GLEAN10022207
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See TKT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006440638.1 (24814365..24839155)

NW_006440638.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene decapping mRNA 1A Neighboring gene protein kinase C delta Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006440638 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transketolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribose phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transketolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006440638.1 Reference ASM32557v1 Primary Assembly

    Range
    24814365..24839155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006917538.2 → XP_006917600.1  transketolase

    UniProtKB/TrEMBL
    L5KBD5
    Conserved Domains (4) summary
    cd07033
    Location:281 → 436
    TPP_PYR_DXS_TK_like; Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins
    PRK05899
    Location:8 → 582
    PRK05899; transketolase; Reviewed
    cd02012
    Location:20 → 233
    TPP_TK; Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the ...
    pfam02780
    Location:454 → 574
    Transketolase_C; Transketolase, C-terminal domain
Nucleotide Protein
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