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PKD1L3 polycystin 1 like 3, transient receptor potential channel interacting [ Pteropus alecto (black flying fox) ]

Gene ID: 102891521, updated on 30-Mar-2024

Summary

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Gene symbol
PKD1L3
Gene description
polycystin 1 like 3, transient receptor potential channel interacting
Locus tag
PAL_GLEAN10016298
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See PKD1L3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006434825.1 (15088815..15151803)

NW_006434825.1Genomic Context describing neighboring genes Neighboring gene haptoglobin Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene cAMP-regulated phosphoprotein 19 pseudogene Neighboring gene IST1 factor associated with ESCRT-III Neighboring gene 5S ribosomal RNA Neighboring gene zinc finger protein 821

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006434825 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystic kidney disease protein 1-like 3
Names
Polycystic kidney disease protein 1-like 3
polycystic kidney disease 1-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006434825.1 Reference ASM32557v1 Primary Assembly

    Range
    15088815..15151803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015587729.2 → XP_015443215.1  polycystic kidney disease protein 1-like 3 isoform X6

    UniProtKB/TrEMBL
    L5KUC8
    Conserved Domains (4) summary
    cd01752
    Location:650 → 766
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam08016
    Location:1229 → 1642
    PKD_channel; Polycystin cation channel
    cl00473
    Location:1555 → 1642
    BI-1-like; BAX inhibitor (BI)-1/YccA-like protein family
    cl02559
    Location:540 → 579
    GPS; GPCR proteolysis site, GPS, motif

  2. XM_025045262.1 → XP_024901030.1  polycystic kidney disease protein 1-like 3 isoform X2

    UniProtKB/TrEMBL
    L5KUC8
    Conserved Domains (4) summary
    cd00037
    Location:18 → 112
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd01752
    Location:711 → 827
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    cl02559
    Location:601 → 640
    GPS; GPCR proteolysis site, GPS, motif
    cl27887
    Location:1290 → 1703
    PKD_channel; Polycystin cation channel

  3. XM_025045264.1 → XP_024901032.1  polycystic kidney disease protein 1-like 3 isoform X5

    UniProtKB/TrEMBL
    L5KUC8
    Conserved Domains (4) summary
    cd00037
    Location:18 → 112
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd01752
    Location:697 → 807
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    cl02559
    Location:601 → 640
    GPS; GPCR proteolysis site, GPS, motif
    cl27887
    Location:1270 → 1683
    PKD_channel; Polycystin cation channel

  4. XM_015587727.2 → XP_015443213.1  polycystic kidney disease protein 1-like 3 isoform X1

    UniProtKB/TrEMBL
    L5KUC8
    Conserved Domains (5) summary
    cd00037
    Location:33 → 137
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd01752
    Location:736 → 852
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam08016
    Location:1315 → 1728
    PKD_channel; Polycystin cation channel
    cl00473
    Location:1641 → 1728
    BI-1-like; BAX inhibitor (BI)-1/YccA-like protein family
    cl02559
    Location:626 → 665
    GPS; GPCR proteolysis site, GPS, motif

  5. XM_025045263.1 → XP_024901031.1  polycystic kidney disease protein 1-like 3 isoform X4

    UniProtKB/TrEMBL
    L5KUC8
    Conserved Domains (4) summary
    cd00037
    Location:33 → 137
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd01752
    Location:736 → 852
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    cl02559
    Location:626 → 665
    GPS; GPCR proteolysis site, GPS, motif
    cl27887
    Location:1315 → 1686
    PKD_channel; Polycystin cation channel

  6. XM_015587728.2 → XP_015443214.1  polycystic kidney disease protein 1-like 3 isoform X3

    UniProtKB/TrEMBL
    L5KUC8
    Conserved Domains (5) summary
    cd00037
    Location:33 → 137
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd01752
    Location:736 → 852
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam08016
    Location:1315 → 1728
    PKD_channel; Polycystin cation channel
    cl00473
    Location:1641 → 1728
    BI-1-like; BAX inhibitor (BI)-1/YccA-like protein family
    cl02559
    Location:626 → 665
    GPS; GPCR proteolysis site, GPS, motif
Nucleotide Protein
Heading Accession and Version

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