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SMPD1 sphingomyelin phosphodiesterase 1 [ Pteropus alecto (black flying fox) ]

Gene ID: 102889583, updated on 30-Mar-2024

Summary

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Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
Locus tag
PAL_GLEAN10003267
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See SMPD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006438643.1 (275199..279669, complement)

NW_006438643.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102889160 Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene caveolae associated protein 3 Neighboring gene TBC1 domain family member 12-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006438643 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase
Names
sphingomyelin phosphodiesterase 1, acid lysosomal

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006438643.1 Reference ASM32557v1 Primary Assembly

    Range
    275199..279669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006915663.3 → XP_006915725.1  sphingomyelin phosphodiesterase

    See identical proteins and their annotated locations for XP_006915725.1

    UniProtKB/TrEMBL
    L5KCE4
    Conserved Domains (3) summary
    smart00741
    Location:82 → 155
    SapB; Saposin (B) Domains
    cd00842
    Location:196 → 491
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:249 → 456
    Metallophos; Calcineurin-like phosphoesterase
Nucleotide Protein
Heading Accession and Version

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