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CHML CHM like Rab escort protein [ Pteropus alecto (black flying fox) ]

Gene ID: 102881079, updated on 30-Mar-2024

Summary

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Gene symbol
CHML
Gene description
CHM like Rab escort protein
Locus tag
PAL_GLEAN10002485
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See CHML in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006443262.1 (222930..230577)

NW_006443262.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 64 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC112472776 Neighboring gene opsin 3 Neighboring gene kynurenine 3-monooxygenase Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006443262 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of bat genomes provides insight into the evolution of flight and immunity. Zhang G, et al. Science, 2013 Jan 25. PMID 23258410, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-dissociation inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rab proteins geranylgeranyltransferase component A 2
Names
CHM like Rab escort protein 2
Rab proteins geranylgeranyltransferase component A 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006443262.1 Reference ASM32557v1 Primary Assembly

    Range
    222930..230577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006924118.3 → XP_006924180.1  rab proteins geranylgeranyltransferase component A 2

    See identical proteins and their annotated locations for XP_006924180.1

    UniProtKB/TrEMBL
    L5JSL7
    Conserved Domains (1) summary
    cl21454
    Location:6 → 541
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

  2. XM_025041210.1 → XP_024896978.1  rab proteins geranylgeranyltransferase component A 2

    UniProtKB/TrEMBL
    L5JSL7
    Conserved Domains (1) summary
    cl21454
    Location:6 → 541
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version

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