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LINC01828 long intergenic non-protein coding RNA 1828 [ Homo sapiens (human) ]

Gene ID: 102800447, updated on 10-Oct-2023

Summary

Official Symbol
LINC01828provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1828provided by HGNC
Primary source
HGNC:HGNC:52634
See related
AllianceGenome:HGNC:52634
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
2p14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (67086446..67289244)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (67096010..67298956)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (67313578..67516376)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1799 Neighboring gene long intergenic non-protein coding RNA 1628 Neighboring gene uncharacterized LOC105374785 Neighboring gene HHc2:066104 enhancer downstream of MEIS1 Neighboring gene HHc2:066522 enhancer downstream of MEIS1 Neighboring gene long intergenic non-protein coding RNA 1829 Neighboring gene uncharacterized LOC101927661 Neighboring gene HHc2:066644 enhancer downstream of MEIS1 Neighboring gene HHc2:066683 enhancer downstream of MEIS1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:67556875-67557456 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:67558406-67558919 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:67559946-67560457 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:67560458-67560970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:67561484-67561996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:67583148-67583648 Neighboring gene uncharacterized LOC107985891 Neighboring gene ETAA1 activator of ATR kinase Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:67690923-67691503

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110564.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023115, BC040863

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    67086446..67289244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    67096010..67298956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)