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LINC01230 long intergenic non-protein coding RNA 1230 [ Homo sapiens (human) ]

Gene ID: 102800446, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01230provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1230provided by HGNC
Primary source
HGNC:HGNC:49686
See related
AllianceGenome:HGNC:49686
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lnc-DRMT2; linc-DMRT2; TCONS_00015639
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Genomic context

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Location:
9p24.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (1048143..1048641)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (1049812..1050310)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (1048143..1048641)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1073, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19727 Neighboring gene H3 histone pseudogene 29 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:1046691-1047556 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:1047960-1048147 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:1050129-1050998 Neighboring gene doublesex and mab-3 related transcription factor 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:1083793-1084293 Neighboring gene RPS27A pseudogene 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Linc01230, transcriptionally regulated by PPARγ, is identified as a novel modifier in endothelial function. Liu L, et al. Biochem Biophys Res Commun, 2018 Dec 9. PMID 30454889
  2. Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases. Liu Y, et al. Arterioscler Thromb Vasc Biol, 2014 Apr. PMID 24504737, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. These results conclude linc01230 as a novel modifier in PPARgamma-mediated activation of Akt in endothelial function.
    Title: Linc01230, transcriptionally regulated by PPARγ, is identified as a novel modifier in endothelial function.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110643.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL358976

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    1048143..1048641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    1049812..1050310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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