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Lncppara long noncoding RNA near Ppara [ Mus musculus (house mouse) ]

Gene ID: 102800312, updated on 22-Oct-2024

Summary

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Official Symbol
Lncpparaprovided by MGI
Official Full Name
long noncoding RNA near Pparaprovided by MGI
Primary source
MGI:MGI:5568843
See related
Ensembl:ENSMUSG00000116305 AllianceGenome:MGI:5568843
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Lincppara; Mirlet7bhg; linc-Ppara
Expression
Broad expression in cerebellum adult (RPKM 7.1), frontal lobe adult (RPKM 4.9) and 18 other tissues See more
Orthologs
human all
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Genomic context

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See Lncppara in Genome Data Viewer
Location:
15 E2; 15
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (85530302..85591725)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (85703773..85707524)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27 pseudogene Neighboring gene wingless-type MMTV integration site family, member 7B Neighboring gene expressed sequence AU022754 Neighboring gene STARR-positive B cell enhancer mm9_chr15:85465006-85465307 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:85484419-85484572 Neighboring gene microRNA let7c-2 Neighboring gene microRNA let7b Neighboring gene predicted gene, 34622 Neighboring gene predicted gene, 46529

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Non-coding RNA Neat1 and Abhd11os expressions are dysregulated in medium spiny neurons of Huntington disease model mice. Park H, et al. Neurosci Res, 2019 Oct. PMID 30391555
  2. Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs. Lai KM, et al. PLoS One, 2015. PMID 25909911, Free PMC Article
  3. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. Sauvageau M, et al. Elife, 2013 Dec 31. PMID 24381249, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Other Names

  • MIRLET7B host gene (non-protein coding)
  • long intergenic noncoding RNA near Ppara

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110483.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC162302

  2. NR_185126.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC162302
    Related
    ENSMUST00000241017.2

  3. NR_188491.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC162302
    Related
    ENSMUST00000230913.4

  4. NR_188493.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC162302

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    85530302..85591725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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